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- Carlos O. Miller Professor of Biochemistry (WARF Named Professorship) – 2018
- Hilldale Professorship – 2013
- American Association fo the Advancement of Science Fellow – 2011
- Elected Fellow of the American Society of Plant Biologists – 2009
- Hildale Professorship – 2008
- Spitzer Excellence in Teaching Award, CALS – 2008
- Alliant Energy Underkofler Excellence in Teaching Award, UW-Madison – 2008
- U.S. National Academy of Sciences – 2006
- Howard Hughes Medical Institute Teaching Professor – 2006
- Kellett Award – 2005
- Hilldale Award in the Biological Sciences – 2005
- Wisconsin Distinguished Professor of Biochemistry, UW-Madison – 2003
- Industrial & Economic Development Program Award, CALS, UW-Madison – 2000-2001
- Vilas Associates Award, Division of Biological Sciences, UW-Madison – 1999-2001
- Alexander von Humboldt Foundation Award – 1999
- Wisconsin Distinguished Professor of Biochemistry, UW-Madison – 1998
- Industrial and Economic Development Program Award, University-Industry Relations, UW-Madison – 1998-1999
- Presidential Young Investigator Award, National Science Foundation – 1989-1994
- McKnight Foundation Individual Research Award in Plant Biology – 1986
- Shaw Scientist, Greater Milwaukee Foundation – 1986-1991